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Team:UCLondon/Source Data
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==References== | ==References== | ||
| - | + | List of key references: | |
| - | + | ||
<html> | <html> | ||
| - | + | <ul> | |
| - | Boycheva S, Chkodrov G, Ivanov I. (2002) Codon pairs in the genome of Echerichia coli. Bioinf. 19(8):987-998. | + | <li>Boycheva S, Chkodrov G, Ivanov I. (2002) Codon pairs in the genome of Echerichia coli. Bioinf. 19(8):987-998. |
| - | <br/> | + | <br/></li> |
| - | Pfitzinger H, Guillernaut P, Weil JH, Pillay DTN. (1987) Adjustment of the tRNA population to the codon usage in chloroplasts. Nucleic Acid Res. 15(4):1377-1386. | + | <li>Kane JF. (1995) Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli. Curr. Opin. Biotechnol. 6:494-500. |
| - | <br/> | + | <br/></li> |
| - | Sharp MP, Li WH. (1987) Codon Adaptation Index – a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acid Res. 15:1281-1295. | + | <li>Marintchev A, Wagner G. (2004) Translation initiation: structures, mechanisms and evolution. Q. Rev. Biophys. 37:197-284.<br/></li> |
| - | <br/> | + | <li>Pfitzinger H, Guillernaut P, Weil JH, Pillay DTN. (1987) Adjustment of the tRNA population to the codon usage in chloroplasts. Nucleic Acid Res. 15(4):1377-1386. |
| - | Tuller T, Waldman YY, Kupiec M, Ruppin E. (2010) Translation efficiency is determined by both codon bias and folding energy. Proc. Natl Acad. Sci. 107:3645-3650. | + | <br/></li> |
| - | <br/> | + | <li>Sharp MP, Li WH. (1987) Codon Adaptation Index – a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acid Res. 15:1281-1295. |
| - | Welch M, Villalobos A, Gustafsson C, Minshull J. (2011) Designing Genes for Successful Protein Expression. Methods Enzymol. 498:43-66.PMID: 21601673 | + | <br/></li> |
| - | <br/> | + | <li>Tuller T, Waldman YY, Kupiec M, Ruppin E. (2010) Translation efficiency is determined by both codon bias and folding energy. Proc. Natl Acad. Sci. 107:3645-3650. |
| - | < | + | <br/></li> |
| - | < | + | <li>Welch M, Villalobos A, Gustafsson C, Minshull J. (2011) Designing Genes for Successful Protein Expression. Methods Enzymol. 498:43-66.PMID: 21601673 |
| - | + | <br/></li> | |
| - | + | </ul> | |
<br/> | <br/> | ||
| Line 33: | Line 32: | ||
==Acknowledgements== | ==Acknowledgements== | ||
| - | === | + | ===Bioinformaticians=== |
{{:Team:UCLondon/Templates/Acknow-Style |bioinformaticians}} | {{:Team:UCLondon/Templates/Acknow-Style |bioinformaticians}} | ||
| - | {{:Team:UCLondon/Templates/Acknow-Item | class=bioinformaticians|link=<html><a href=" | + | {{:Team:UCLondon/Templates/Acknow-Item | class=bioinformaticians|link=<html><a href="#Bioinformaticians"></html>|picture=<html><img src="http://dl.dropbox.com/u/45600819/igemewiki%20team%20photos/bioinformaticians/bala.jpg" height="50"/></html>|name=Bala Krishnan|role=GUI developer}} |
| - | {{:Team:UCLondon/Templates/Acknow-Item | class=bioinformaticians|link=<html><a href=" | + | {{:Team:UCLondon/Templates/Acknow-Item | class=bioinformaticians|link=<html><a href="http://www.linkedin.com/pub/tulip-nandu/24/7ba/59b"></html>|picture=<html><img src="http://dl.dropbox.com/u/45600819/igemewiki%20team%20photos/bioinformaticians/tulip.jpg" height="50"/></html>|name=Tulip Nandu|role=Tool engineer}} |
| - | {{:Team:UCLondon/Templates/Acknow-Item | class=bioinformaticians|link=<html><a href=" | + | {{:Team:UCLondon/Templates/Acknow-Item | class=bioinformaticians|link=<html><a href="http://uk.linkedin.com/pub/nikunj-maheshwari/15/709/161"></html>|picture=<html><img src="http://dl.dropbox.com/u/45600819/igemewiki%20team%20photos/bioinformaticians/nikunj.jpg" height="50"/></html>|name=Nikunj Maheshwari|role=Database engineer}} |
| - | {{:Team:UCLondon/Templates/Acknow-Item | class=bioinformaticians|picture=<html><img src="http://dl.dropbox.com/u/45600819/igemewiki%20team%20photos/bioinformaticians/rameez.jpg" height="50"/></html>|name=Rameez|role=Backlog maintainer}} | + | {{:Team:UCLondon/Templates/Acknow-Item | class=bioinformaticians |link=<html><a href="#Bioinformaticians"></html>|picture=<html><img src="http://dl.dropbox.com/u/45600819/igemewiki%20team%20photos/bioinformaticians/rameez.jpg" height="50"/></html>|name=Rameez|role=Backlog maintainer}} |
===Collaborators=== | ===Collaborators=== | ||
| Line 67: | Line 66: | ||
{{:Team:UCLondon/Templates/Acknow-Style |special-thanks}} | {{:Team:UCLondon/Templates/Acknow-Style |special-thanks}} | ||
| - | {{:Team:UCLondon/Templates/Acknow-Item | class=special-thanks|link=<html><a href="http://www.ucl.ac.uk/biochemeng/about/staff/AcademicStaff/keshavarz-moore"></html>|picture=<html><img src="http://www.ucl.ac.uk/biochemeng/about/staff/AcademicStaff/keshavarz-moore/moore.jpg" height="50"/></html>|name=Eli Keshavarz-Moore|role=For | + | {{:Team:UCLondon/Templates/Acknow-Item | class=special-thanks|link=<html><a href="http://www.ucl.ac.uk/biochemeng/about/staff/AcademicStaff/keshavarz-moore"></html>|picture=<html><img src="http://www.ucl.ac.uk/biochemeng/about/staff/AcademicStaff/keshavarz-moore/moore.jpg" height="50"/></html>|name=Eli Keshavarz-Moore|role=For giving us insightful feedback with regards to the business plan as well as our presentation.}} |
| - | {{:Team:UCLondon/Templates/Acknow-Item | class=special-thanks|link=<html><a href="http://www.ucl.ac.uk/ward/people/john_ward"></html>|picture=<html><img src="http://www.ucl.ac.uk/news/news-articles/0806/johnward" height="50"/></html>|name=John Ward|role=For | + | {{:Team:UCLondon/Templates/Acknow-Item | class=special-thanks|link=<html><a href="http://www.ucl.ac.uk/ward/people/john_ward"></html>|picture=<html><img src="http://www.ucl.ac.uk/news/news-articles/0806/johnward" height="50"/></html>|name=John Ward|role=For incorporating codon optimization, with specific reference to CUO, into his MEng lectures.}} |
| - | {{:Team:UCLondon/Templates/Acknow-Item | class=special-thanks|link=<html><a href="http://www.synthace.com/sean-ward/"></html>|picture=<html><img src="http://m3.licdn.com/mpr/pub/image-_XaaOkNIIn2uieL8R_3gjrCdY4kLo5i-4X3m1kYIYujj57rq_Xami09IYOQ6jsolUpeV/sean-ward.jpg" height="50"/></html>|name=Sean Ward|role=For | + | {{:Team:UCLondon/Templates/Acknow-Item | class=special-thanks|link=<html><a href="http://www.synthace.com/sean-ward/"></html>|picture=<html><img src="http://m3.licdn.com/mpr/pub/image-_XaaOkNIIn2uieL8R_3gjrCdY4kLo5i-4X3m1kYIYujj57rq_Xami09IYOQ6jsolUpeV/sean-ward.jpg" height="50"/></html>|name=Sean Ward|role=For sharing his lessons in entrepreneurship picked up since the age of 19 and gave us invaluable insights into the field of bioinformatics. Avenues for future collaboration were also discussed.}} |
| - | {{:Team:UCLondon/Templates/Acknow-Item | class=special-thanks|link=<html><a href="http://uk.linkedin.com/pub/marco-federighi/9/28/485"></html>|picture=<html><img src="http://m3.licdn.com/mpr/pub/image-wU35Zaij3n5ckFj-Dma_5A1XCXhnXi8GSNa0eJk5CPqTXxvzwU30e-2jCOfTBLVEJDK1/marco-federighi.jpg" height="50"/></html>|name=Marco Federighi|role=For | + | {{:Team:UCLondon/Templates/Acknow-Item | class=special-thanks|link=<html><a href="http://uk.linkedin.com/pub/marco-federighi/9/28/485"></html>|picture=<html><img src="http://m3.licdn.com/mpr/pub/image-wU35Zaij3n5ckFj-Dma_5A1XCXhnXi8GSNa0eJk5CPqTXxvzwU30e-2jCOfTBLVEJDK1/marco-federighi.jpg" height="50"/></html>|name=Marco Federighi|role=For arranging funding through the UCL Engineering faculty so that both Freedanz and Eliane could attend the iGEM:E jamboree.}} |
Latest revision as of 00:58, 28 October 2012
Morph
Bioinformatics
Source Data
References
List of key references:
- Boycheva S, Chkodrov G, Ivanov I. (2002) Codon pairs in the genome of Echerichia coli. Bioinf. 19(8):987-998.
- Kane JF. (1995) Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli. Curr. Opin. Biotechnol. 6:494-500.
- Marintchev A, Wagner G. (2004) Translation initiation: structures, mechanisms and evolution. Q. Rev. Biophys. 37:197-284.
- Pfitzinger H, Guillernaut P, Weil JH, Pillay DTN. (1987) Adjustment of the tRNA population to the codon usage in chloroplasts. Nucleic Acid Res. 15(4):1377-1386.
- Sharp MP, Li WH. (1987) Codon Adaptation Index – a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acid Res. 15:1281-1295.
- Tuller T, Waldman YY, Kupiec M, Ruppin E. (2010) Translation efficiency is determined by both codon bias and folding energy. Proc. Natl Acad. Sci. 107:3645-3650.
- Welch M, Villalobos A, Gustafsson C, Minshull J. (2011) Designing Genes for Successful Protein Expression. Methods Enzymol. 498:43-66.PMID: 21601673
Acknowledgements
Bioinformaticians
Collaborators
Technologies
Special Thanks
