Team:UCLondon/Source Data

From 2012e.igem.org

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==References==
==References==
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We assure you this will be populated shortly (hopefully before the wiki freeze)
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List of key references:
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<html>
<html>
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<ul>
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<br/>
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<li>Boycheva S, Chkodrov G, Ivanov I. (2002) Codon pairs in the genome of Echerichia coli. Bioinf. 19(8):987-998.
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<br/>
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<br/></li>
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<br/>
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<li>Kane JF. (1995) Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli. Curr. Opin. Biotechnol. 6:494-500.
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<br/>
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<br/></li>
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<br/>
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<li>Marintchev A, Wagner G. (2004) Translation initiation: structures, mechanisms and evolution. Q. Rev. Biophys. 37:197-284.<br/></li>
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<br/>
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<li>Pfitzinger H, Guillernaut P, Weil JH, Pillay DTN. (1987) Adjustment of the tRNA population to the codon usage in chloroplasts. Nucleic Acid Res. 15(4):1377-1386.
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<br/>
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<br/></li>
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<br/>
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<li>Sharp MP, Li WH. (1987) Codon Adaptation Index – a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acid Res. 15:1281-1295.
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<br/>
+
<br/></li>
-
<br/>
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<li>Tuller T, Waldman YY, Kupiec M, Ruppin E. (2010) Translation efficiency is determined by both codon bias and folding energy. Proc. Natl Acad. Sci. 107:3645-3650.
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<br/>
+
<br/></li>
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<br/>
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<li>Welch M, Villalobos A, Gustafsson C, Minshull J. (2011) Designing Genes for Successful Protein Expression. Methods Enzymol. 498:43-66.PMID: 21601673
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<br/>
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<br/></li>
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<br/>
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</ul>
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<br/>
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==Acknowledgements==                                                                                                                                                                               
==Acknowledgements==                                                                                                                                                                               
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===Bioinformations===
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===Bioinformaticians===
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===Web Technologies===
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{{:Team:UCLondon/Templates/Acknow-Style |bioinformaticians}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=bioinformaticians|link=<html><a href="#Bioinformaticians"></html>|picture=<html><img src="http://dl.dropbox.com/u/45600819/igemewiki%20team%20photos/bioinformaticians/bala.jpg" height="50"/></html>|name=Bala Krishnan|role=GUI developer}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=bioinformaticians|link=<html><a href="http://www.linkedin.com/pub/tulip-nandu/24/7ba/59b"></html>|picture=<html><img src="http://dl.dropbox.com/u/45600819/igemewiki%20team%20photos/bioinformaticians/tulip.jpg" height="50"/></html>|name=Tulip Nandu|role=Tool engineer}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=bioinformaticians|link=<html><a href="http://uk.linkedin.com/pub/nikunj-maheshwari/15/709/161"></html>|picture=<html><img src="http://dl.dropbox.com/u/45600819/igemewiki%20team%20photos/bioinformaticians/nikunj.jpg" height="50"/></html>|name=Nikunj Maheshwari|role=Database engineer}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=bioinformaticians |link=<html><a href="#Bioinformaticians"></html>|picture=<html><img src="http://dl.dropbox.com/u/45600819/igemewiki%20team%20photos/bioinformaticians/rameez.jpg" height="50"/></html>|name=Rameez|role=Backlog maintainer}}
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===Collaborators===
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{{:Team:UCLondon/Templates/Acknow-Style |collaborators}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=collaborators|link=<html><a href="http://www.ucl.ac.uk/algae-at-ucl/"></html>|picture=<html><img src="https://dl.dropbox.com/u/3703109/igeme/algal_logo.png" height="50"/></html>|name=UCL Algal Group |role=Validation of Software}}
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===Technologies===
{{:Team:UCLondon/Templates/Acknow-Style |web-tech}}
{{:Team:UCLondon/Templates/Acknow-Style |web-tech}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=web-tech|link=<html><a href="http://jquery.com/"></html>|picture=<html><img src="http://blogs.learnnowonline.com/Portals/153597/images/jquery1.png" height="50"/></html>|name=JQuery|role=Javascript Library}}
{{:Team:UCLondon/Templates/Acknow-Item | class=web-tech|link=<html><a href="http://jquery.com/"></html>|picture=<html><img src="http://blogs.learnnowonline.com/Portals/153597/images/jquery1.png" height="50"/></html>|name=JQuery|role=Javascript Library}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=web-tech|link=<html><a href="http://www.slidesjs.com/"></html>|picture=<html><img src="http://www.slidesjs.com/img/slidesjs.png" height="50"/></html>|name=SlideJS|role=JQuery slideshow plugin}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=web-tech|link=<html><a href="http://www.slidesjs.com/"></html>|picture=<html><img src="http://4.bp.blogspot.com/-Ta9ipKaE5-o/TfLI4i_958I/AAAAAAAAACs/GnsraP73YAc/s1600/The_Matrix%252C_1999%252C_Green_Falling_Code.jpg" height="50"/></html>|name=SlideJS|role=JQuery slideshow plugin}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=web-tech|link=<html><a href="http://shama.github.com/jmpress.js/"></html>|picture=<html><img src="http://4.bp.blogspot.com/-Ta9ipKaE5-o/TfLI4i_958I/AAAAAAAAACs/GnsraP73YAc/s1600/The_Matrix%252C_1999%252C_Green_Falling_Code.jpg" height="50"/></html>|name=jmpress|role=JQuery Presentation Plugin}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=web-tech|link=<html><a href="http://bartaz.github.com/impress.js/"></html>|picture=<html><img src="https://raw.github.com/bartaz/impress.js/9ccb39dc8edb605e68c671494ec34163d9759cdf/favicon.png" height="50"/></html>|name=impress.js|role=Javascript Presentation Library}}
===Special Thanks===
===Special Thanks===
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{{:Team:UCLondon/Templates/Acknow-Style |special-thanks}}
{{:Team:UCLondon/Templates/Acknow-Style |special-thanks}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=special-thanks|link=<html><a href="http://www.ucl.ac.uk/biochemeng/about/staff/AcademicStaff/keshavarz-moore"></html>|picture=<html><img src="http://www.ucl.ac.uk/biochemeng/about/staff/AcademicStaff/keshavarz-moore/moore.jpg" height="50"/></html>|name=Eli Keshavarz-Moore|role=For being legendary}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=special-thanks|link=<html><a href="http://www.ucl.ac.uk/biochemeng/about/staff/AcademicStaff/keshavarz-moore"></html>|picture=<html><img src="http://www.ucl.ac.uk/biochemeng/about/staff/AcademicStaff/keshavarz-moore/moore.jpg" height="50"/></html>|name=Eli Keshavarz-Moore|role=For giving us insightful feedback with regards to the business plan as well as our presentation.}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=special-thanks|link=<html><a href="http://www.ucl.ac.uk/ward/people/john_ward"></html>|picture=<html><img src="http://www.ucl.ac.uk/news/news-articles/0806/johnward" height="50"/></html>|name=John Ward|role=For incorporating codon optimization, with specific reference to CUO, into his MEng lectures.}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=special-thanks|link=<html><a href="http://www.synthace.com/sean-ward/"></html>|picture=<html><img src="http://m3.licdn.com/mpr/pub/image-_XaaOkNIIn2uieL8R_3gjrCdY4kLo5i-4X3m1kYIYujj57rq_Xami09IYOQ6jsolUpeV/sean-ward.jpg" height="50"/></html>|name=Sean Ward|role=For sharing his lessons in entrepreneurship picked up since the age of 19 and gave us invaluable insights into the field of bioinformatics. Avenues for future collaboration were also discussed.}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=special-thanks|link=<html><a href="http://www.ucl.ac.uk/ward/people/john_ward"></html>|picture=<html><img src="http://www.ucl.ac.uk/news/news-articles/0806/johnward" height="50"/></html>|name=John Ward|role=For being legendary}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=special-thanks|link=<html><a href="http://uk.linkedin.com/pub/marco-federighi/9/28/485"></html>|picture=<html><img src="http://m3.licdn.com/mpr/pub/image-wU35Zaij3n5ckFj-Dma_5A1XCXhnXi8GSNa0eJk5CPqTXxvzwU30e-2jCOfTBLVEJDK1/marco-federighi.jpg" height="50"/></html>|name=Marco Federighi|role=For arranging funding through the UCL Engineering faculty so that both Freedanz and Eliane could attend the iGEM:E jamboree.}}

Latest revision as of 00:58, 28 October 2012

Source Data

Contents

References

List of key references:

  • Boycheva S, Chkodrov G, Ivanov I. (2002) Codon pairs in the genome of Echerichia coli. Bioinf. 19(8):987-998.
  • Kane JF. (1995) Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli. Curr. Opin. Biotechnol. 6:494-500.
  • Marintchev A, Wagner G. (2004) Translation initiation: structures, mechanisms and evolution. Q. Rev. Biophys. 37:197-284.
  • Pfitzinger H, Guillernaut P, Weil JH, Pillay DTN. (1987) Adjustment of the tRNA population to the codon usage in chloroplasts. Nucleic Acid Res. 15(4):1377-1386.
  • Sharp MP, Li WH. (1987) Codon Adaptation Index – a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acid Res. 15:1281-1295.
  • Tuller T, Waldman YY, Kupiec M, Ruppin E. (2010) Translation efficiency is determined by both codon bias and folding energy. Proc. Natl Acad. Sci. 107:3645-3650.
  • Welch M, Villalobos A, Gustafsson C, Minshull J. (2011) Designing Genes for Successful Protein Expression. Methods Enzymol. 498:43-66.PMID: 21601673

Acknowledgements

Bioinformaticians

Collaborators

Technologies

Special Thanks




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