Team:UCLondon/Source Data

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==References==
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List of key references:
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<li>Boycheva S, Chkodrov G, Ivanov I. (2002) Codon pairs in the genome of Echerichia coli. Bioinf. 19(8):987-998.
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<br/></li>
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<li>Kane JF. (1995) Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli. Curr. Opin. Biotechnol. 6:494-500.
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<br/></li>
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You are provided with this team page template with which to start the iGEM season. You may choose to personalize it to fit your team but keep the same "look." Or you may choose to take your team wiki to a different level and design your own wiki. We cannot give any examples because none have been created yet. So, use your imagination and strive for clarity.
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<li>Marintchev A, Wagner G. (2004) Translation initiation: structures, mechanisms and evolution. Q. Rev. Biophys. 37:197-284.<br/></li>
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<li>Pfitzinger H, Guillernaut P, Weil JH, Pillay DTN. (1987) Adjustment of the tRNA population to the codon usage in chloroplasts. Nucleic Acid Res. 15(4):1377-1386.  
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<br/></li>
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You <strong>MUST</strong> have a team description page, a description of the problem you are solving/opportunity you are creating as well as your solution, an executive summary and 3 min elevator pitch video, description and links to any source and market data, and an attributions page. PLEASE keep all of your pages within your teams namespace.
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<li>Sharp MP, Li WH. (1987) Codon Adaptation Index – a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acid Res. 15:1281-1295.  
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<br/></li>
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<li>Tuller T, Waldman YY, Kupiec M, Ruppin E. (2010) Translation efficiency is determined by both codon bias and folding energy. Proc. Natl Acad. Sci. 107:3645-3650.
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<br/></li>
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<li>Welch M, Villalobos A, Gustafsson C, Minshull J. (2011) Designing Genes for Successful Protein Expression. Methods Enzymol. 498:43-66.PMID: 21601673
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==Acknowledgements==                                                                                                                                                                             
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===Bioinformaticians===
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{{:Team:UCLondon/Templates/Acknow-Style |bioinformaticians}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=bioinformaticians|link=<html><a href="#Bioinformaticians"></html>|picture=<html><img src="http://dl.dropbox.com/u/45600819/igemewiki%20team%20photos/bioinformaticians/bala.jpg" height="50"/></html>|name=Bala Krishnan|role=GUI developer}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=bioinformaticians|link=<html><a href="http://www.linkedin.com/pub/tulip-nandu/24/7ba/59b"></html>|picture=<html><img src="http://dl.dropbox.com/u/45600819/igemewiki%20team%20photos/bioinformaticians/tulip.jpg" height="50"/></html>|name=Tulip Nandu|role=Tool engineer}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=bioinformaticians|link=<html><a href="http://uk.linkedin.com/pub/nikunj-maheshwari/15/709/161"></html>|picture=<html><img src="http://dl.dropbox.com/u/45600819/igemewiki%20team%20photos/bioinformaticians/nikunj.jpg" height="50"/></html>|name=Nikunj Maheshwari|role=Database engineer}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=bioinformaticians |link=<html><a href="#Bioinformaticians"></html>|picture=<html><img src="http://dl.dropbox.com/u/45600819/igemewiki%20team%20photos/bioinformaticians/rameez.jpg" height="50"/></html>|name=Rameez|role=Backlog maintainer}}
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===Collaborators===
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{{:Team:UCLondon/Templates/Acknow-Style |collaborators}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=collaborators|link=<html><a href="http://www.ucl.ac.uk/algae-at-ucl/"></html>|picture=<html><img src="https://dl.dropbox.com/u/3703109/igeme/algal_logo.png" height="50"/></html>|name=UCL Algal Group |role=Validation of Software}}
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===Technologies===
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{{:Team:UCLondon/Templates/Acknow-Style |web-tech}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=web-tech|link=<html><a href="http://jquery.com/"></html>|picture=<html><img src="http://blogs.learnnowonline.com/Portals/153597/images/jquery1.png" height="50"/></html>|name=JQuery|role=Javascript Library}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=web-tech|link=<html><a href="http://www.slidesjs.com/"></html>|picture=<html><img src="http://4.bp.blogspot.com/-Ta9ipKaE5-o/TfLI4i_958I/AAAAAAAAACs/GnsraP73YAc/s1600/The_Matrix%252C_1999%252C_Green_Falling_Code.jpg" height="50"/></html>|name=SlideJS|role=JQuery slideshow plugin}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=web-tech|link=<html><a href="http://shama.github.com/jmpress.js/"></html>|picture=<html><img src="http://4.bp.blogspot.com/-Ta9ipKaE5-o/TfLI4i_958I/AAAAAAAAACs/GnsraP73YAc/s1600/The_Matrix%252C_1999%252C_Green_Falling_Code.jpg" height="50"/></html>|name=jmpress|role=JQuery Presentation Plugin}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=web-tech|link=<html><a href="http://bartaz.github.com/impress.js/"></html>|picture=<html><img src="https://raw.github.com/bartaz/impress.js/9ccb39dc8edb605e68c671494ec34163d9759cdf/favicon.png" height="50"/></html>|name=impress.js|role=Javascript Presentation Library}}
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===Special Thanks===
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{{:Team:UCLondon/Templates/Acknow-Style |special-thanks}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=special-thanks|link=<html><a href="http://www.ucl.ac.uk/biochemeng/about/staff/AcademicStaff/keshavarz-moore"></html>|picture=<html><img src="http://www.ucl.ac.uk/biochemeng/about/staff/AcademicStaff/keshavarz-moore/moore.jpg" height="50"/></html>|name=Eli Keshavarz-Moore|role=For giving us insightful feedback with regards to the business plan as well as our presentation.}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=special-thanks|link=<html><a href="http://www.ucl.ac.uk/ward/people/john_ward"></html>|picture=<html><img src="http://www.ucl.ac.uk/news/news-articles/0806/johnward" height="50"/></html>|name=John Ward|role=For incorporating codon optimization, with specific reference to CUO, into his MEng lectures.}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=special-thanks|link=<html><a href="http://www.synthace.com/sean-ward/"></html>|picture=<html><img src="http://m3.licdn.com/mpr/pub/image-_XaaOkNIIn2uieL8R_3gjrCdY4kLo5i-4X3m1kYIYujj57rq_Xami09IYOQ6jsolUpeV/sean-ward.jpg" height="50"/></html>|name=Sean Ward|role=For sharing his lessons in entrepreneurship picked up since the age of 19 and gave us invaluable insights into the field of bioinformatics. Avenues for future collaboration were also discussed.}}
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{{:Team:UCLondon/Templates/Acknow-Item | class=special-thanks|link=<html><a href="http://uk.linkedin.com/pub/marco-federighi/9/28/485"></html>|picture=<html><img src="http://m3.licdn.com/mpr/pub/image-wU35Zaij3n5ckFj-Dma_5A1XCXhnXi8GSNa0eJk5CPqTXxvzwU30e-2jCOfTBLVEJDK1/marco-federighi.jpg" height="50"/></html>|name=Marco Federighi|role=For arranging funding through the UCL Engineering faculty so that both Freedanz and Eliane could attend the iGEM:E jamboree.}}
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===Source Data===
 
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Describe, summarize and link to any data sources you used, including public datasets, bibliographies, news articles, etc. Do not post any proprietary data from private or closed databases, but describe the kind of insight you gleaned from them.
 
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This section is a very important because it helps future teams, and contributes to the public commons and knowledge about Synthetic Biology.
 
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{| style="color:#1b2c8a;background-color:#0c6;" cellpadding="3" cellspacing="1" border="1" bordercolor="#fff" width="62%" align="center"
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!align="center"|[[Team:UCLondon|Home]]
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!align="center"|[[Team:UCLondon/Team|Team]]
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!align="center"|[[Team:UCLondon/Opportunity|Problem,Opportunity and Solution]]
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!align="center"|[[Team:UCLondon/Summary|Executive Summary and Elevator Pitch]]
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!align="center"|[[Team:UCLondon/Source_Data|Source Data]]
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!align="center"|[[Team:UCLondon/Attributions|Attributions]]
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Latest revision as of 00:58, 28 October 2012

Source Data

Contents

References

List of key references:

  • Boycheva S, Chkodrov G, Ivanov I. (2002) Codon pairs in the genome of Echerichia coli. Bioinf. 19(8):987-998.
  • Kane JF. (1995) Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli. Curr. Opin. Biotechnol. 6:494-500.
  • Marintchev A, Wagner G. (2004) Translation initiation: structures, mechanisms and evolution. Q. Rev. Biophys. 37:197-284.
  • Pfitzinger H, Guillernaut P, Weil JH, Pillay DTN. (1987) Adjustment of the tRNA population to the codon usage in chloroplasts. Nucleic Acid Res. 15(4):1377-1386.
  • Sharp MP, Li WH. (1987) Codon Adaptation Index – a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acid Res. 15:1281-1295.
  • Tuller T, Waldman YY, Kupiec M, Ruppin E. (2010) Translation efficiency is determined by both codon bias and folding energy. Proc. Natl Acad. Sci. 107:3645-3650.
  • Welch M, Villalobos A, Gustafsson C, Minshull J. (2011) Designing Genes for Successful Protein Expression. Methods Enzymol. 498:43-66.PMID: 21601673

Acknowledgements

Bioinformaticians

Collaborators

Technologies

Special Thanks




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